Gscope Environment Variables

From Wikili

Gscope needs to know the Gscope Project it has to manage.

For that folllowing environment variables are set with the command (see the file setgscope)

 setgscoperr MyProject

• setenv REPERTOIREDUGENOME /genomics/MyProject (the directory which contains the Gscope Project)

• setenv NCBI /bips/share/ncbi
• setenv BLASTDB /catalog/blast

• the PATH is modified and contains at least
  • /home/ripp/gscope/bin
  • /home/ripp/mulali
  • /bips/EMBOSS/bin
  • /bips/bin

Following command are also launched

 setsrs
 setmulali
 setncbi

REPERTOIREDUGENOME and /home/ripp/gscope/bin are necessary and sufficient to run Gscope in visualisation mode.

Please see the file setgscope